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Journals and Books

Atomic, Molecular, and Optical Physics
^ Paraoanu, G. S. and H. Scutaru. Fidelity for multimode thermal squeezed states. Phys. Rev. A, 61, 022306-1-4 (2000).

Biomolecular and Biological Physics
^ Arcangeli, C., W. Yu, S. Cannistraro, and E. Gratton. Two-photon autofluorescence microscopy and spectroscopy of an Antarctic fungus: a new approach for studying the effect of UV-B irradiation. Biopolymers, 57, 218-225 (2000).

^ Bagatolli, L. A. and E. Gratton. A correlation between lipid domain shape and binary phospholipid mixture composition in free-standing bilayers: a two-photon fluorescence microscopy study. Biophys. J., 79, 434-447 (2000).

^ Bagatolli, L. A. and E. Gratton. Two-photon fluorescence microscopy of coexisting lipid domains in giant unilamellar vesicles of binary phospholipid mixtures. Biophys. J., 78, 290-305 (2000).

^ Bagatolli, L. A., T. Parasassi, and E. Gratton. Giant phospholipid vesicles: comparison among the whole lipid sample characteristics using different preparation methods: a two-photon fluorescence microscopy study. Chem. Phys. Lipids, 105, 135-147 (2000).

^ Bagatolli, L. A., E. Gratton, T. K. Khan, and P. L. G. Chong. Two-photon fluorescence microscopy studies of biopolar tetraether giant liposomes from thermoacidophilic archaebacteria Solfolubus acidocaldarius. Biophys. J., 79, 416-425 (2000).

^ Bettati, S., S. Benci, B. Campanini, S. Raboni, G. Chirico, S. Beretta, K. D. Schnackerz, T. L. Hazlett, E. Gratton, and A. Mozzarelli. Role of pyridoxal 5-phosphate in the structural stabilization of 0-acetylserine sulfhydrylase. J. Biol. Chem., 275, 40244-40251 (2000).

^ Buehler, Ch., C. Y. Dong, P. T. C. So, T. French, and E. Gratton. Time-resolved polarization imaging by pump-probe (stimulated emission) fluorescence microscopy. Biophys. J., 79, 536-549 (2000).

^ Casavola, C., L. A. Paunescu, S. Fantini, M. A. Franceschini, and E. Gratton. Blood flow and oxygen consumption with near-infrared spectroscopy and venous occlusion: spatial maps and the effect of time and pressure of inflation. J. Biomed. Opt., 5:3, 269-276 (2000).

^ Chen, J. and P. R. Selvin. Lifetime and color-tailored fluorophores in the micro- to milli-second time regime. J. Am. Chem. Soc., 122, 657-660 (2000).

^ Chen, J. and P. R. Selvin. Synthesis of 7-amino-4-trifluoromethyl-2-(1H)-quinolinone and its use as an antenna molecule for luminescent europium polyaminocarboxylates chelates. J. Photochem. Photobiol., 135, 27-32 (2000).

^ Chen, Y., J. D. Müller, S. Y. Tetin, J. D. Tyner, and E. Gratton. Probing ligand protein binding equilbria with fluorescence fluctuation spectroscopy. Biophys. J., 79, 1074-1084 (2000).

^ Damjanovic, A., T. Ritz, and K. Schulten. Excitation energy trapping by the reaction center of rhodobacter sphaeroides. Int. J. Quantum Chem., 77, 139-151 (2000).

^ Eid, J. S., J. D. Muller, and E. Gratton. Data acquisition card for fluctuation correlation spectroscopy allowing full access to the detected photon sequence. Rev. Sci. Instrum., 71:2, 361-368 (2000).

^ Fantini, S. and E. Gratton. Fluorescence photon-density waves in optically diffusive media. Opt. Commun., 173, 73-79 (2000).

^ Franceschini, M. A., V. Toronov, M. Filiaci, E. Gratton, and S. Fantini. On-line optical imaging of the human brain with 160-ms temporal resolution. Opt. Express, 6:3, 49-57 (2000).

^ Franceschini, M. A., V. Toronov, M. E. Filliaci, M. Wolf, A. Michalos, E. Gratton, and S. Fantini. Real-time video of cerebral hemodynamics in the human brain using non-invasive optical imaging. Neuroimage, 11:5, S454 (2000).

^ Frolov, A., A. Petrescu, B. P. Atshaves, P. T. C. So, E. Gratton, G. Serrero, and F. Schroeder. High-density lipoprotein-mediated cholesterol uptake and targeting to lipid droplets in intact L-cell fibroblasts. A single- and multiphoton fluorescence approach. J. Biol. Chem., 275, 12769-12780 (2000).

^ Kessel, A., K. Schulten, and N. Ben-Tal. Calculations suggest a pathway for the transverse diffusion of a hydrophobic peptide across a lipid bilayer. Biophys. J., 79, 2322-2330 (2000).

^ Lamb, D. C., J. Kriegl, K. Kastens, and G. U. Nienhaus. Quantum-mechanical tunneling of water in heme proteins. J. Phys. Org. Chem., 13, 659-663 (2000).

^ Lamb, D. C., A. Schenk, C. Rocker, and G. U. Nienhaus. Determining chemical rate coefficients using time-gated fluorescence correlation spectroscopy. J. Phys. Org. Chem., 13, 654-658 (2000).

^ Lamb, D. C., A. Schenk, C. Rocker, C. Scalfi-Happ, and G. U. Nienhaus. Sensitivity enhancement in fluorescence correlation spectroscopy of multiple species using time-gated detection. Biophys. J., 79, 1129-1138 (2000).

^ Lavalle, P., A. L. DeVries, C. C. C. Cheng, S. Scheuring, and J. J. Ramsden. Direct observation of postadsorption aggregation of antifreeze glycoproteins on silicates. Langmuir, 16, 5785-5789 (2000).

^ Lu, H. and K. Schulten. The key event in force-induced unfolding of titin's immunoglobulin domains. Biophys. J., 79, 51-65 (2000).

^ Lu, H., B. Isralewitz, A. Krammer, V. Vogel, and K. Schulten. Computer modeling of force-induced titin domain unfolding. In Elastic Filaments of the Cell Kluwer Academic/Plenum Publishers, New York, N.Y., 143-162 (2000).

^ Müller, J. D., Y. Chen, and E. Gratton. Resolving heterogeneity on the single molecular level with the photon counting histogram. Biophys. J., 78:1, 474-486 (2000).

^ Molnar, F., L. S. Norris, and K. Schulten. Simulated (un)binding of arachidonic acid in the cyclooxygenase site of prostaglandin H-2 synthase-1. Progr. React. Kinet., 25, 263-298 (2000).

^ Molnar, F., M. Ben-Nun, T. J. Martinez, and K. Schulten. Characterization of a conical intersection between the ground and first excited state for a retinal analog. Theochem. J. Molec. Struct. (Special WATOC issue), 506, 169-178 (2000).

^ Ostermann, A., R. Waschipky, F. G. Parak, and G. U. Nienhaus. Ligand binding and conformational motions in myoglobin. Nature, 404, 205-208 (2000).

^ Parasassi, T., W. Yu, D. Durbin, L. Kuriashkina, E. Gratton, N. Maeda, and F. Ursini. Two-photon microscopy of aorta fibers shows proteolysis induced by LDL hydroperoxides. Free Radic. Biol. Med., 28:11, 1589-1597 (2000).

^ Ritz, T., S. Adem, and K. Schulten. A model for photoreceptor-based magnetoreception in birds. Biophys. J., 78, 707-718 (2000).

^ Schulten, K.. To students contemplating research in biomolecular modelling. J. Mol. Graphics Model., 18, 218-220 (2000).

^ Selvin, P. R.. The renaissance of fluorescence resonance energy transfer. Nat. Struct. Biol., 7, 730-734 (2000).

^ Sharma, R., M. Zeller, V. I. Pavlovic, T. S. Huang, Z. Lo, S. Chu, Y. Zhao, J. C. Phillips, and K. Schulten. Speech/gesture interface to a visual-computing environment. IEEE Comput. Graphics Appl., 20, 29-37 (2000).

^ Strickman, D., B. Timberlake, J. Estrada-Franco, M. B. Weissman, P. W. Fenimore, and R. J. Novak. Effects of magnetic fields on mosquitoes. J. Am. Mosquito Control Assoc., 16, 131-137 (2000).

^ Stuhmeier, F., A. Hillisch, R. M. Clegg, and S. Diekmann. Fluorescence energy transfer analysis of DNA structures containing several bulges and their interaction with CAP (Review). J. Mol. Biol., 302, 1081-1100 (2000).

^ Sukhishvili, S. A., Y. Chen, J. D. Muller, E. Gratton, K. S. Schweizer, and S. Granick. Materials science—diffusion of a polymer 'pancake'. Nature, 406, 146 (2000).

^ Tajkhorshid, E., J. Baudry, K. Schulten, and S. Suhai. Molecular dynamics study of the nature and origin of retinal's twisted structure in bacteriorhodopsin. Biophys. J., 78, 683-693 (2000).

^ Tetin, S. Y. and T. L. Hazlett. Optical spectroscopy in studies of antibody-hapten interactions. Methods, 20, 341-361 (2000).

^ Toronov, V., M. A. Franceschini, M. Filiaci, S. Fantini, M. Wolf, A. Michalos, and E. Gratton. Near-infrared study of fluctuations in cerebral hemodynamics during rest and motor stimulation: temporal analysis and spatial mapping. Med. Phys., 27:4, 801-815 (2000).

^ Wolf, M., U. Wolf, V. Toronov, L. A. Paunescu, A. Michalos, M. A. Franceschini, S. Fantini, and E. Gratton. Fast cerebral functional signals in the 100-ms range detected by frequency-domain near-infrared spectroscopy. Neuroimage, 11:5, S515 (2000).

^ Yu, W., W. W. Mantulin, and E. Gratton. Fluorescence lifetime imaging: new microscopy technologies. In Emerging Tools for Single-Cell Analysis Wiley-Liss, New York, N.Y., 139-173 (2000).

^ Zhuang, X., L. Bartley, H. P. Babcock, R. Russell, T. Ha, D. Herschlag, and S. Chu. A single molecule study of RNA catalysis and folding. Science, 288, 2048-2051 (2000).

^ Zolese, G., G. Falcioni, E. Bertoli, R. Galeazzi, M. Wozniak, Z. Wypych, and A. Ambrosini. Steady-state and time resolved fluorescence of albumins interacting with N-oleylethanolamine, a component of the endogenous N-acylethanolamines. Proteins: Struct. Function Genet., 40, 39-48 (2000).

Complex and Nonlinear Systems
^ Board, J. and K. Schulten. The fast multipole algorithm. IEEE Comput. Sci. Eng., 2, 56-59 (2000).

^ Dahmen, K. A., D. R. Nelson, and N. M. Shnerb. Life and death near a windy oasis. J. Math. Biol., 41, 1-23 (2000).

^ Melby, P., J. Kaidel, N. Weber, and A. Hübler. Adaptation to the edge of chaos in the self-adjusting logistic map. Phys. Rev. Lett., 84, 5991-5993 (2000).

^ Oono, Y.. Renormalization and asymptotics. Int. J. Mod. Phys. B, 14:12-13, 1327-1361 (2000).

^ Petta, J. R., T. Ladd, and M. B. Weissman. Nonlinear AC response and noise of a giant-magnetoresistive sensor. IEEE Trans. Magn., 36, 2057-2061 (2000).

Experimental Atomic, Molecular, Optical, and Quantum Physics
^ Akcakir, O., J. Theiren, N. Barry, M. H. Nayfeh, and E. Gratton. Detection of luminescent single ultrasmall silicon nanoparticles using fluctuation correlation spectroscopy. Appl. Phys. Lett., 76, 1857-1859 (2000).

^ Enzer, D. G., M. M. Schauer, J. J. Gomez, M. S. Gulley, M. H. Holzscheiter, P. G. Kwiat, S. K. Lamoreaux, C. G. Peterson, C. G. Sandberg, D. Tupa, R. J. Hughes, and D. F. V. James. Observation of power-law scaling for phase transitions in linear trapped ion crystals. Phys. Rev. Lett., 85, 2466-2469 (2000).

^ Hughes, R. J., W. T. Buttler, P. G. Kwiat, S. K. Lamoreaux, G. L. Morgan, J. E. Nordholt, and C. G. Peterson. Free-space quantum cryptography in daylight. SPIE Proc., 3932, 117-126 (2000).

^ Hughes, R. J., W. T. Buttler, P. G. Kwiat, S. K. Lamoreaux, G. L. Morgan, J. E. Nordholt, and C. G. Peterson. Free-space quantum key distribution in daylight. J. Mod. Opt., 47, 549-562 (2000).

^ Kwiat, P. G. and R. J. Hughes. The usefulness of Rydberg atoms for quantum information storage and processing. Science, 289, 1431a (2000).

^ Kwiat, P. G., A. J. Berglund, J. B. Altepeter, and A. G. White. Experimental verification of decoherence-free subspaces. Science, 290, 498-501 (2000).

^ Kwiat, P. G., J. R. Mitchell, P. D. D. Schwindt, and A. G. White. All-optical implementation of Grover's search algorithm. J. Mod. Opt., 47, 257-266 (2000).

^ Naik, D. S., C. G. Peterson, A. G. White, A. J. Berglund, and P. G. Kwiat. Entangled state quantum cryptography: eavesdropping on the Ekert protocol. Phys. Rev. Lett., 84, 4733-4736 (2000).

^ Nayfeh, M. H., O. Akcakir, G. Belomoin, N. Barry, J. Therrien, and E. Gratton. Second harmonic generation in microcrystallite films of ultrasmall Si nanoparticles. Appl. Phys. Lett., 77, 4086-4088 (2000).

Experimental Condensed Matter Physics
^ Aubin, H., D. E. Pugel, E. Badica, L. H. Greene, S. Jain, and D. G. Hinks. In-plane quasi-particle tunneling into Bi2Sr2CaCu2O8. Phys. C, 341, 1681-1682 (2000).

^ Bains, A. S., C. A. Gordon, A. V. Granato, and R. B. Schwarz. The shear modulus of bulk amorphous Pd40Ni40P20 and its relation to viscosity and specific heat. J. Alloys Compounds, 310, 20-23 (2000).

^ Blumberg, G. and M. V. Klein. Raman active collective mode in underdoped cuprates. Phys. B, 280, 180-181 (2000).

^ Bonalde, I., B. D. Yanoff, D. J. Van Harlingen, M. B. Salamon, and Y. Maeno. Magnetic penetration depth and the symmetry of the order parameter in Sr2RuO4. Phys. C, 341, 1695-1696